The first step that you should do on the backup domain controller is to run dcpromo to get it out of the domain controller role.
After that, you decommission the server, reload, delete computer account (which should now be in the computers ou - not the domain controller ou), join the server to the domain, and then run dcpromo to get the server back in as a domain controller.
On another note, if the only think that you are doing is trying to increase the partition size, you could try to use gparted and modify the partitions without having to go through all of this process.
Here is the link to GParted - The Live CD works great!:
http://gparted.sourceforge.net/livecd.phphttp://gparted.sourceforge.net/index.php