I looked at both solutions and had yet to try them as I don't have a 4P non-raid SATA Controller. I didn't want to plug the RAIDED drives into the mainboard SATA's as these are populated with the only working backup of data from April and I didn't want to lose that as well.
Whilst my mind was churning over the potential effects of the loss of data, I thought back to all events preceding the failure. What I couldn't understand is why the promise controller is not being seen at initialisation at boot but is seen in windows. Yesterday I had plugged an external USB HDD in for the very purpose of making a backup with BUE which is when everything seems to have gone to hell. I removed this and reconfigured the BIOS boot order (the USB HDD seems to change it) and suddenly the promise controller was seen at boot. Also all data appeared in Windows with no apparent ill effects.
So not sure what is going on except I don't trust the promise controller/ Mainboard anymore and it will teach me to practice what I preach about backups! One has been kicked off now - users on system or not.
Not sure what is fairest way to split points my thoughts are 400 for 1st answer and 100 for second answer or a 250 split - what do you guys think?