Question : Problem: Backup Exec 10d skipping the following files.

Backup- C: The item C:\Program Files\Microsoft SQL Server\MSSQL$BKUPEXEC\LOG\ERRORLOG in use - skipped.
The item C:\Program Files\VERITAS\Backup Exec\NT\Catalogs\{077424BE-FD9E-408C-9AF0-35191BCD11D9}_1.img in use - skipped.
The item C:\Program Files\VERITAS\Backup Exec\NT\Data\BEX_SERVER_00078.xml in use - skipped.
The item C:\Program Files\VERITAS\Backup Exec\NT\Logs\adamm.log in use - skipped.
The item C:\Program Files\Z-Firm LLC\ShipRush v3\DATA\DatabaseMSSQL$SHIPRUSH3\LOG\ERRORLOG in use - skipped.
The item C:\Program Files\Z-Firm LLC\ShipRush v3\UPSRates\URC.DBF in use - skipped.
The item C:\Program Files\Z-Firm LLC\ShipRush v3\UPSRates\URC_IDX.CDX in use - skipped.
The item C:\WINDOWS\WindowsUpdate.log in use - skipped.
The item C:\WINDOWS\security\logs\scepol.log in use - skipped.
The item C:\WINDOWS\SoftwareDistribution\ReportingEvents.log in use - skipped.
The item C:\WINDOWS\SoftwareDistribution\EventCache\{8150F806-8DD5-4F84-83FE-BB03849C5790}.bin in use - skipped.
The item C:\WINDOWS\system32\h323log.txt in use - skipped.
The item C:\WINDOWS\system32\hmdebug.log in use - skipped.
The item C:\WINDOWS\system32\LogFiles\HTTPERR\httperr1.log in use - skipped.
The item C:\WINDOWS\system32\LogFiles\W3SVC1\ex060207.log in use - skipped.
The item C:\WINDOWS\system32\LogFiles\W3SVC4\ex060207.log in use - skipped.
Backup- D: The item D:\Program Files\Exchsrvr\bin\store.fcl in use - skipped.
The item D:\Program Files\Exchsrvr\Mailroot\vsi 1\Queue\NTFS_07e0035801c62aed000001da.EML in use - skipped.
The item D:\Program Files\Exchsrvr\Mailroot\vsi 1\Queue\NTFS_8b4f402801c62aca0000019a.EML in use - skipped.
The item D:\Program Files\Exchsrvr\Mailroot\vsi 1\Queue\NTFS_b68518ca01c62afd0000020c.EML in use - skipped.
The item D:\Program Files\Exchsrvr\Mailroot\vsi 1\Queue\NTFS_f956cc3801c62ac200000180.EML in use - skipped.
The item D:\Program Files\Microsoft SQL Server\MSSQL$SBSMONITORING\LOG\ERRORLOG in use - skipped.
The item D:\Program Files\Microsoft SQL Server\MSSQL$SBSMONITORING\LOG\SQLAGENT.OUT in use - skipped.
The item D:\Program Files\Microsoft SQL Server\MSSQL$SHAREPOINT\LOG\ERRORLOG in use - skipped.
Backup- \\SERVER2\C: The item \\SERVER2\C:\Program Files\Microsoft SQL Server\MSSQL\LOG\ERRORLOG in use - skipped.
The item \\SERVER2\C:\Program Files\Microsoft SQL Server\MSSQL\LOG\SQLAGENT.OUT in use - skipped.
The item \\SERVER2\C:\WINDOWS\RaidMon.txt in use - skipped.
The item \\SERVER2\C:\WINDOWS\WindowsUpdate.log in use - skipped.
The item \\SERVER2\C:\WINDOWS\SoftwareDistribution\ReportingEvents.log in use - skipped.
The item \\SERVER2\C:\WINDOWS\system32\h323log.txt in use - skipped.
____________________________________________________________________________________________________________________

Can I exclude any of these files from the backup??

Answer : Problem: Backup Exec 10d skipping the following files.

Your trying to backup the files. With backupexec and the SQL Agent you should see the SQL Server as a SQL server in the selection list when you select what you backup. That is what you use the SQL agent for. You will then be backing up the database and not the individual files.